PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00511.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 318aa    MW: 34594.9 Da    PI: 4.8097
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00511.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF321.6e-101853944
                    HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    r   f kR+ g+  KAeELS+ C+++vav+  ++ g
  Pahal.E00511.1 18 RLARFMKRKDGLKRKAEELSTRCAVDVAVVCTGPGG 53
                    55679**************************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0016162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.325154IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-141189IPR002100Transcription factor, MADS-box
PfamPF003193.6E-111654IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MTRGKVGSVR AAVNLRDRLA RFMKRKDGLK RKAEELSTRC AVDVAVVCTG PGGRGDPDCW  60
PSKEAATEVA RRYSALDPAQ RAKHTEDHAA GVARRLAEER DKLVRAREGG VPGSLGSWDG  120
SLEGVSEEKL RELLASIDGS LVAVKNRVLE LQAPLGAAAD RATLWSVLVH DDNDIFVPPH  180
GEADAGGGGL HPPPSKNPNS PNAVPVDAGE EVVAENIVTA EDAGDEVQML QPPRDADEWM  240
RGPVDDIKKR PQPYNPAAYD TRIQYISVGR FMMELDTYEF IRFDLGMPPP CIAPNSLDDD  300
DGEPLKLWSW DNTMPRF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456823.11e-119hypothetical protein SORBIDRAFT_03g043520
TrEMBLK3XSP11e-135K3XSP1_SETIT; Uncharacterized protein
STRINGSi004941m1e-134(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1587778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.12e-12AGAMOUS-like 36